I maintain some R packages that implement research methods for computational immunology. These packages are also on R-forge. If you wish to join me in developing any of these packages or have a feature request or bug report, please contact me.
Predicts binding of 9- to 12-mer peptides to MHC class I molecules using the stabilized matrix method (B. Peters and colleagues). Can predict binding for several alleles from humans (HLA A/B), mice (H-2), chimpanzees (Patr A/B), and rhesus macaques (Mamu A/B).
The following documentation is available:
Install the current version using:
install.packages("EpitopePrediction", repos="http://R-Forge.R-project.org")
Statistics to describe tracks of moving things (x-y-z-t data) such as cells, bacteria or animals. Available measures include mean square displacement, confinement ratio, autocorrelation, asphericity, turning angle, and fractal dimension.
The following documentation is available:
Install the current version using:
install.packages("MotilityLab", repos="http://R-Forge.R-project.org")